Home.md

-**Introduction**
-___
+## Introduction
 This project is designed to help new users in the Mathews group with little or no experience in coding get started.  This introduction will cover a range of topics ranging from programming basics to the practical aspects of using Linux.
 
-**Quick Start**
+## Quick Start
 *  [Quick Start](Quick Start)
 
-**Topics**
-___
+## Topics
 *  [Linux](Linux)
 *  [Shell Scripting](Shell Scripting)
 *  [git](git)
@@ -15,11 +13,8 @@ ___
 *  [R](R)
 *  [Python](Python)
 
-
-
-
-**RNAstructure Algorithms**
-___
+## RNAstructure Algorithms
+*  [Nearest Neighbor Thermodynamic Model](Nearest Neighbors)
 *  [Dynamic Programming Algorithm](Dynamic Programming Algorithm)
 *  [Minimum Free Energy Structures](Minimum Free Energy Structures)
 *  [Partition Function](Partition Function)